José Ignacio Rojas Echenique

rojasechenique@fas.harvard.edu

http://www.jireva.org

+1 (971) 222-8263

Harvard University
Northwest laboratories
Room 457.10
52 Oxford Street
Cambridge, MA 02138

Education

2011—present:

Harvard University

Department of Organismic and Evolutionary Biology

2006—2010:

University of Chicago

Concentration in Biology with a specialization in Ecology and Evolution

Research

2011—present:

Marx Lab, Harvard University

I’m interested in the possible forms that organisms in a population can take on as the population evolves. Conceptually we organize these forms (or phenotypes) according to their fitness and mutational distance from one another on a fitness landscape. I’m working towards an understanding of the physiological traits and interactions that make up a model fitness landscape: the central carbon metabolism of Methylobacterium extorquens.

2009—2010:

Allesina Lab, University of Chicago

Dynamics of intransitive competitive relationships.

Summer courses

2011:

Hopkins Microbiology Course, Stanford University

2009:

Eco-Informatics Summer Institute, Oregon State University

Moth ecology in the Sub-Alpine Meadows of the H.J. Andrews Experimental Forest

2007:

Summer Program for Undergraduate Research, University of Oregon

Nematode Ecology: Developing methods for the identification of gut contents

Publications

Clarity: An Open-Source Manager for Laboratory Automation

Nigel F. Delaney*, José I. Rojas Echenique*, and Christopher J. Marx.

Journal of Laboratory Automation 2211068212460237. First published on October 2, 2012

[doi:10.1177/2211068212460237] [pdf]

Interaction rules affect species coexistence in intransitive networks.

José Rojas Echenique and Stefano Allesina.

Ecology 92:1174–1180. 2011.

[doi:10.1890/10-0953.1] [pdf]

Conference talks and posters

Modeling methanol catabolism in Methylobacterium extorquens

José I. Rojas Echenique, Christopher Marx

2014 Gordon Research Conference, and invited speaker at 2014 Gordon-Kenan Research Seminar on the Molecular Basis of Microbial One-Carbon Metabolism

Epistasis in the context of redundant pathways for formaldehyde oxidation

José I. Rojas Echenique, Lon Chubiz, Christopher Marx

2012 Gordon Research Conference, and 2012 Gordon-Kenan Research Seminar on the Molecular Basis of Microbial One-Carbon Metabolism

Not Research

Python group

I organize a group of my fellow graduate students for an informal introduction to computer programing. I write some of my own material but also use material from Software Carpentry.

Data and source code

I host the source code and data for all my research on an online git repository.

Outreach

Society for Advancement of Chicanos and Native Americans in Science

I have attended the SACNAS National Conference every year since 2012 representing my department, and encouraging minority students to apply.

Awards

Press